Publications
2023
2022
2021
2019
2017
2016
2015
2024
Shrestha, S., Goswami, S., Banerjee, D., Garcia, V., Zhou, E., Olmsted, C. N., Majumder, E. L. ‐W., Kumar, D., Awasthi, D., Mukhopadhyay, A., Singer, S. W., Gladden, J. M., Simmons, B. A., & Choudhary, H. (2024). Perspective on lignin conversion strategies that enable Next Generation Biorefineries. ChemSusChem. https://doi.org/10.1002/cssc.202301460
Shrestha, S., Awasthi, D., Chen, Y., Gin, J., Petzold, C., Adams, P., Simmons, B., Singer, S., 2023. Simultaneous carbon catabolite repression governs sugar and aromatic utilization in Pseudomonas putida M2. Applied and Environmental Microbiology, e00852-23. https://doi.org/10.1128/aem.00852-23
Wu, Z., Nguyen, D., Shrestha, S., Raskin, L., Khanal, S.K. and Lee, P.H., 2023. Evaluation of Nanaerobic Digestion as a Mechanism to Explain Surplus Methane Production in Animal Rumina and Engineered Digesters. Environmental Science & Technology, 57(33), pp.12302-12314. https://doi.org/10.1021/acs.est.2c07813
S. Shrestha, D. Awasthi, Y. Chen, JW. Gin, CJ. Petzold, PD. Adams, ... 2023. Simultaneous carbon catabolite repression governs sugar and aromatic co-utilization in Pseudomonas putida M2. bioRxiv, 2023.05. 23.541960. https://doi.org/10.1101/2023.05.23.541960
X. Fonoll Almansa, K.Zhu, L. Aley, S. Shrestha, L. Raskin. 2023. Simulating Rumen Conditions using an Anaerobic Dynamic Membrane Bioreactor to Enhance Hydrolysis of Lignocellulosic Biomass. bioRxiv, 2023.02. 20.529314. https://doi.org/10.1101/2023.02.20.529314
Shrestha, S., Xue, S. and Raskin, L., 2023. Competitive reactions during ethanol chain elongation were temporarily suppressed by increasing hydrogen partial pressure through methanogenesis inhibition. Environmental Science & Technology, 57(8), pp.3369-3379.. https://doi.org/10.1021/acs.est.2c09014
Shrestha, S., Colcord, B., Fonoll, X. and Raskin, L., 2022. Fate of influent microbial populations during medium chain carboxylic acid recovery from brewery and pre-fermented food waste streams. Environmental Science: Water Research & Technology, 8(2), pp.257-269.. https://doi.org/10.1039/D1EW00656H
Shrestha, S., Xue, S., Kitt, D., Song, H., Truyers, C., Muermans, M., Smets, I. and Raskin, L., 2021. Anaerobic dynamic membrane bioreactor development to facilitate organic waste conversion to medium-chain carboxylic acids and their downstream recovery. ACS ES&T Engineering, 2(2), pp.169-180. https://doi.org/10.1021/acsestengg.1c00273.
Karki, R., Chuenchart, W., Surendra, K.C., Shrestha, S., Raskin, L., Sung, S., Hashimoto, A. and Khanal, S.K., 2021. Anaerobic co-digestion: Current status and perspectives. Bioresource Technology, 330, p.125001.10.1016/j.biortech.2021.125001.
Fonoll, X*., Shrestha, S*., Khanal, S.K., Dosta, J., Mata-Alvarez, J. and Raskin, L., 2021. Understanding the anaerobic digestibility of lignocellulosic substrates using rumen content as a cosubstrate and an inoculum. ACS ES&T Engineering, 1(3), pp.424-435. https://doi.org/10.1021/acsestengg.0c00164 *Equal contribution
Wu, Z., Nguyen, D., Lam, T.Y., Zhuang, H., Shrestha, S., Raskin, L., Khanal, S.K. and Lee, P.H., 2021. Synergistic association between cytochrome bd-encoded Proteiniphilum and reactive oxygen species (ROS)-scavenging methanogens in microaerobic-anaerobic digestion of lignocellulosic biomass. Water Research, 190, p.116721.. https://doi.org/10.1016/j.watres.2020.116721.
Nguyen, D., Wu, Z., Shrestha, S., Lee, P.H., Raskin, L. and Khanal, S.K., 2019. Intermittent micro-aeration: New strategy to control volatile fatty acid accumulation in high organic loading anaerobic digestion. Water Research, 166, p.115080.https://doi.org/10.1016/j.watres.2019.115080.
Shrestha, S., Fonoll, X., Khanal, S.K. and Raskin, L., 2017. Biological strategies for enhanced hydrolysis of lignocellulosic biomass during anaerobic digestion: Current status and future perspectives. Bioresource Technology, 245, pp.1245-1257.https://doi.org/10.1016/j.biortech.2017.08.089.
Sawatdeenarunat, C., Nguyen, D., Surendra, K.C., Shrestha, S., Rajendran, K., Oechsner, H., Xie, L. and Khanal, S.K., 2016. Anaerobic biorefinery: current status, challenges, and opportunities. Bioresource technology, 215, pp.304-313.https://doi.org/10.1016/j.biortech.2016.03.074.
Surendra, K.C., Sawatdeenarunat, C., Shrestha, S., Sung, S. and Khanal, S.K., 2015. Anaerobic digestion-based biorefinery for bioenergy and biobased products. Industrial Biotechnology, 11(2), pp.103-112.https://doi.org/10.1089/ind.2015.0001.
Fonoll, X., Zhu, K., Aley, L., Shrestha, S., Raskin, L. (2024) Simulating rumen conditions using an anaerobic dynamic membrane bioreactor to enhance hydrolysis of lignocellulosic biomass. Environmental Science & Technology, 58(3), 1741-1751. https://doi.org/10.1021/acs.est.3c06478
Lyu, X., Nuhu, M., Candry, P., Wolfanger, J., Betenbaugh, M., Saldivar, A., Zuniga, C., Wang, Y., & Shrestha, S. (2024). Top-down and bottom-up microbiome engineering approaches to enable biomanufacturing from waste biomass. Journal of Industrial Microbiology and Biotechnology, 51. https://doi.org/10.1093/jimb/kuae025
Ames Hall
3400 N. Charles Street
Baltimore, Maryland 21218
Shrestha Lab
Department of Environmental Health and
Engineering
Johns Hopkins University